iGNM 2.0
Home  |   Tutorial  |   Theory  |   References  |   ENM 1.0  |   ANM 2.0  |   Computational & Systems Biology  |   NTHU site

Mobility ( → increase)
The structure is colored based on the size of fluctuations driven by the slowest two modes.

Results of 101M:

 Correlation: 0.63

Results in plain text

Input file and parameters:
PDB title: SPERM WHALE MYOGLOBIN F46V N-BUTYL ISOCYANIDE AT PH 9.0
PDB: 101M.pdb,    chain: all,    model No.: 1
Exp. method: X-RAY DIFFRACTION (2.07 Å)
No. of nodes for nucleotide: 3-node
Total number of nodes in the network: 154
Cutoff for amino acid and nucleotide: 7.3 and 7.3 Å

Biological assembly: 


  logl

Reference:  Li,H., Chang,YY, Yang,LW and Bahar,I. (2016) iGNM 2.0: The Gaussian Network Model Database for Biomolecular Structural Dynamics. Nucleic Acids Res., 44, D415-D422.

Contact:  The server is maintained by Dr. Hongchun Li in the Bahar Lab at the Department of Computational & Systems Biology at the University of Pittsburgh, School of Medicine, and sponsored by the NIH awards #5R01GM099738-04 and #5P41GM103712-03 and the funding #104-2113-M-007-019 from MOST to the Yang lab at the National Tsing Hua University, Taiwan.

For questions and comments please contact Hongchun Li.