Mobility ( → increase)
The structure is colored based on the size of fluctuations driven by the slowest two modes.
Results of 101M:
Input file and parameters:
PDB title: SPERM WHALE MYOGLOBIN F46V N-BUTYL ISOCYANIDE AT PH 9.0
PDB: 101M.pdb, chain: all, model No.: 1
Exp. method: X-RAY DIFFRACTION (2.07 Å)
No. of nodes for nucleotide: 3-node
Total number of nodes in the network: 154
Cutoff for amino acid and nucleotide: 7.3 and 7.3 Å
Reference: Li,H., Chang,YY, Yang,LW and Bahar,I. (2016) iGNM 2.0: The Gaussian Network Model Database for Biomolecular Structural Dynamics. Nucleic Acids Res., 44, D415-D422.
Contact: The server is maintained by Dr. Hongchun Li in the Bahar Lab at the Department of Computational & Systems Biology at the University of Pittsburgh, School of Medicine, and sponsored by the NIH awards #5R01GM099738-04 and #5P41GM103712-03 and the funding #104-2113-M-007-019 from MOST to the Yang lab at the National Tsing Hua University, Taiwan.